PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024877
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 270aa    MW: 28861.1 Da    PI: 7.9421
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024877genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.42.4e-38211211100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll +lp  +r +a+ +++yeA+ar+rdPvyG+v+++++lq+q++ l+a+++++
  Lus10024877  21 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHLPAADRCEAVVTIAYEAQARLRDPVYGCVAHVFALQHQVAYLQAQVVQM 118
                  7*************************99*******************************************************************998 PP

       DUF260  98 kee 100
                  k++
  Lus10024877 119 KAH 121
                  876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.76320122IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-3721119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MASSGASGTS SSGGGGGAGT PCGACKFLRR KCAADCIFAP YFCSEQGPAR FAAIHKVFGA  60
SNVSKLLLHL PAADRCEAVV TIAYEAQARL RDPVYGCVAH VFALQHQVAY LQAQVVQMKA  120
HLAQNNYVMD PPRNTSNNYN STSTPYNSWQ ENNHNSTCTA ATNTTTGTVP SGEWGATVPA  180
VATNYPHCYS FNPPPNTVSP QSSPESVDYS GRGGGRAAPE DYYNYLTQQN IKYRDEEAPA  240
MFGQPTPRKR PYNNELGDLQ ALALKMMGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026012.16e-82PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB75e-68LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A067FM801e-81A0A067FM80_CITSI; Uncharacterized protein
TrEMBLI1JP221e-81I1JP22_SOYBN; Uncharacterized protein
STRINGGLYMA03G31830.14e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-63lateral organ boundaries-domain 16